Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0833150 with 3 members (lactase)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata /

... /

Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria / Euarchontoglires / Primates / Haplorrhini / Simiiformes / Platyrrhini /

Cebidae

Completeness score: 1.00

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

82.7%

This HOG has 1971 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0660541	Protostomia	72		31.9%	4
HOG:E0520078	Gastropoda	21		9.5%	4
HOG:E0990046	p__Proteobacteria	17		58.8%	4
HOG:E0659344	Protostomia	15		46.7%	4
HOG:E0605311	Formicidae	7		57.1%	4
HOG:E0533346	Mollusca	5		40.0%	4
HOG:E0732442	Mammalia	4		50.0%	4
HOG:E0636100	Neoptera	44		9.1%	3
HOG:E1019144	Bacteria	13		61.5%	3
HOG:E0567623	Chromadorea	11		45.5%	3
HOG:E0590959	Arachnida	11		18.2%	3
HOG:E0627107	Schizophora	7		28.6%	3
HOG:E0142391	Alveolata	6		50.0%	3
HOG:E0538323	Lophotrochozoa	5		40.0%	3
HOG:E0124975	Cryptosporidium	3		66.7%	3
HOG:E0599217	Nymphalidae	3		66.7%	3
HOG:E0802380	Eukaryota	1152		43.8%	2
HOG:E0803155	Eukaryota	602		51.8%	2
HOG:E0820798	Eukaryota	417		85.9%	2
HOG:E0804776	Eukaryota	354		50.3%	2
HOG:E0821832	Eukaryota	306		55.6%	2
HOG:E0982059	o__Enterobacterales	258		42.2%	2
HOG:E0822686	Eukaryota	149		55.0%	2
HOG:E0805879	Eukaryota	141		62.4%	2
HOG:E0984624	c__Gammaproteobacteria	86		52.3%	2

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